CANCER SUBTYPING
- PINSPlus: subtyping and big data analysis
– CRAN: https://CRAN.R-project.org/package=PINSPlus - SMRT: subtyping and big data analysis
– Web application: https://smrt.tinnguyen-lab.com/
– CRAN: https://CRAN.R-project.org/package=PINSPlus
PATHWAY & INTEGRATION
- CPA: Consensus pathway analysis and interactive pathway visualization
– Tutorial: https://storage.googleapis.com/nosi-gcloud-course/html/intro.html
SINGLE-CELL ANALYSIS
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scCAN: single-cell clustering using autoencoder and network fusion
– Publication: https://www.nature.com/articles/s41598-022-14218-6
– CRAN: https://CRAN.R-project.org/package=scCAN -
scISR: A novel method for single-cell data imputation using subspace regression
– Publication: https://www.nature.com/articles/s41598-022-06500-4
– CRAN: https://cran.r-project.org/package=scISR -
scDHA: Fast and precise single-cell data analysis using a hierarchical autoencoder
– Publication: https://www.nature.com/articles/s41467-021-21312-2
– CRAN: https://CRAN.R-project.org/package=scDHA