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Publications
Type
Conference paper
Journal article
Date
2022
2021
2020
2019
scCAN: single-cell clustering using autoencoder and network fusion
Unsupervised clustering of single-cell RNA sequencing data (scRNA-seq) is important because it allows us to identify putative cell …
Bang_Tran
,
Hung Nguyen
,
Duc Tran
,
Seungil Ro
,
Bang Tran
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Code
DOI
Online Link
A novel method for single-cell data imputation using subspace regression
Recent advances in biochemistry and single-cell RNA sequencing (scRNA-seq) have allowed us to monitor the biological systems at the …
Duc Tran
,
Bang_Tran
,
Hung Nguyen
,
Bang Tran
PDF
Code
DOI
Online Link
scIDS: Single-cell Imputation by combining Deep autoencoder neural networks and Subspace regression
Single-cell RNA-sequencing (scRNA-seq) has emerged as a powerful high throughput technique that enables the characterization of …
Bang_Tran
,
Quyen Nguyen
,
Sangam Shrestha
,
Bang Tran
PDF
Online Link
SMRT: Randomized Data Transformation for Cancer Subtyping and Big Data Analysis
Cancer is an umbrella term that includes a range of disorders, from those that are fast-growing and lethal to indolent lesions with low …
Hung Nguyen
,
Duc Tran
,
Bang_Tran
,
Monikrishna Roy
,
Adam Cassell
,
Sergiu Dascalu
,
Sorin_Draghici
,
Bang Tran
PDF
Code
Online Link
Single-Cell RNA Sequencing Data Imputation Using Deep Neural Network
Recent research in biology has shifted the focus toward single-cell data analysis. The new single-cell technologies have allowed us to …
Duc Tran
,
Bang_Tran
,
Hung Nguyen
,
Frederick C. Harris Jr.
,
Nam Sy Vo
,
Bang Tran
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DOI
Online Link
Fast and precise single-cell data analysis using a hierarchical autoencoder
A primary challenge in single-cell RNA sequencing (scRNA-seq) studies comes from the massive amount of data and the excess noise level. …
Duc Tran
,
Hung Nguyen
,
Bang_Tran
,
Carlo La Vecchia
,
Hung N. Luu
,
Bang Tran
PDF
Cite
Code
Online Link
Disease subtyping using community detection from consensus networks
Cancer is a complex disease including a range of disorders that are activated simultaneously by multiple biological processes on …
Hung Nguyen
,
Bang_Tran
,
Duc Tran
,
Quang-Huy Nguyen
,
Duc-Hau Le
,
Bang Tran
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Online Link
A comprehensive survey of regulatory network inference methods using single-cell RNA sequencing data
Gene regulatory network is a complicated set of interactions between genetic materials, which dictates how cells develop in living …
Hung Nguyen
,
Duc Tran
,
Bang_Tran
,
Bahadir Pehlivan
,
Bang Tran
PDF
Cite
DOI
Online Link
RIA: a novel Regression-based Imputation Approach for single-cell RNA sequencing
Advances in single-cell technologies have shifted genomics research from the analysis of bulk tissues toward a comprehensive …
Bang_Tran
,
Duc Tran
,
Hung Nguyen
,
Nam Sy Vo
,
Bang Tran
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